Basic Information
VIS ID
TVIS42000428
Fusion event
EBV-COX15 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
63730
Orient
+
Integrated sequence
GAGGCCTTTGTGGATCTGGACGCGTGGCTCTCCGGCGGCGCCGGGGGTGGCGGTGGAGTATGCTTCGTCGGGGGGCTGGGCCTGCAGCCGTGCCCCGCCG| |ATGCGCGCCTCTATGTCGCTCTGACCTATGAGGAAGCCGGGCCGCGGTTTACGTTTTTCCAGTCGTCCCGCGGCCACTGTCAGATCATGAATATCTTAAG
Host Sequence
Chromosome
chr10
Cytoband
q24.2
Reference genome
End
101485330/99725573 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-107/Upstream/801005; hsa-mir-1307/Downstream/1249412;
Upstream sequence
tctctcccaggttggagtgcagtggcgtgatctcggctcactacaacctctgcctcctgggttcaagtaatcctcctgcctcagcctcccaggtagctgg
Downstream sequence
gatcgcaggtgcccaccactgcgcccagctaaattttgtatttttagtatagatgggatttcaccatgttggccagtctggtctccaactcctgacctca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate