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TVIS42000428
Basic Information
VIS ID
TVIS42000428
Fusion event
EBV-COX15 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
63730
Orient
+
Integrated sequence
GAGGCCTTTGTGGATCTGGACGCGTGGCTCTCCGGCGGCGCCGGGGGTGGCGGTGGAGTATGCTTCGTCGGGGGGCTGGGCCTGCAGCCGTGCCCCGCCG| |ATGCGCGCCTCTATGTCGCTCTGACCTATGAGGAAGCCGGGCCGCGGTTTACGTTTTTCCAGTCGTCCCGCGGCCACTGTCAGATCATGAATATCTTAAG
Host Sequence
Chromosome
chr10
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
101485330/99725573 (Hg38)
End
101485330/99725573 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D
;
FRA10A
;
FRA10B
Target gene
COX15
miRNAs that regulate target gene
hsa-mir-218-5p
;
hsa-mir-4480
;
hsa-mir-519e-3p
;
hsa-mir-515-3p
;
hsa-mir-33b-3p
;
hsa-mir-371a-3p
;
hsa-mir-371b-3p
;
hsa-mir-7855-5p
;
hsa-mir-592
;
hsa-mir-6864-5p
;
hsa-mir-597-5p
;
hsa-mir-4710
;
hsa-mir-4792
;
hsa-mir-939-5p
;
hsa-mir-1343-5p
;
hsa-mir-6827-5p
;
hsa-mir-505-5p
;
hsa-mir-7515
;
hsa-mir-3179
;
hsa-mir-199b-5p
;
hsa-mir-199a-5p
;
hsa-mir-4717-3p
;
hsa-mir-575
;
hsa-mir-4676-5p
;
hsa-mir-448
;
hsa-mir-4267
;
hsa-mir-153-3p
Nearest miRNA
hsa-mir-107/Upstream/801005; hsa-mir-1307/Downstream/1249412;
Nearest TSS
ENST00000439456/Upstream/8927;
ENST00000370472/Downstream/6527;
Nearest CpG islands
None/Target,
chr10-CpG: 68/Upstream/65741
,
chr10-CpG: 66/Downstream/6350
Upstream sequence
tctctcccaggttggagtgcagtggcgtgatctcggctcactacaacctctgcctcctgggttcaagtaatcctcctgcctcagcctcccaggtagctgg
Downstream sequence
gatcgcaggtgcccaccactgcgcccagctaaattttgtatttttagtatagatgggatttcaccatgttggccagtctggtctccaactcctgacctca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Sample Information
×
Sample name
Raji
Sample type
Cell line
Gender
Female
CpG Island Information
×
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