Basic Information
VIS ID
TVIS42000429
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
145226
Orient
+
Integrated sequence
AGTGGACACCGGGCTATATGTGGGGATGTCTGTGGCTTGTCATTTCCTCTTAGAAGGTAATCCCCCATCTTAACTTCCCTTTAAATTGTGATGCAAGCCC| |TGGGTTATTTATAGAATGATTATCTAGGTTTGATAGTCTGAAGGCTGGGCAGAGAATGTTTGTAATTTTTATTCACCTTCTTTACCCCCCACGAGTATCC
Host Sequence
Chromosome
chr10
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
110116472/108356714 (Hg38)
End
110116472/108356714 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/4088309; hsa-mir-202/Downstream/2541376;
Nearest TSS
ENST00000439456/Upstream/158865; ENST00000421481/Downstream/205101;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/441508, chr10-CpG: 63/Downstream/109455
Upstream sequence
TAGTCACTTTTGTGATTATATTATTTTATCTAAGACTCCAtcatagcagactggaaggagagagagaatcttctactggctttgaagaagtaagctactt
Downstream sequence
tgttgggagagagccacgtggttggggcttgagagcagcctctaagaactgagagcaaaccccactaatagcccatgagaaaacagggacttcgactact
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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