Basic Information
VIS ID
TVIS42000430
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
133773
Orient
-
Integrated sequence
AGCGGCGCGTGTTCCCTAAGCAGCTGAGGGGCAACCTGAACTTTACCAACTCCGTCTCCCTAAAGCTGATGACAGAAGTGGTGGCGGTGCTTGAGGGCAC| |CACCCAGGACTTTTTCTCAGACGTCAGGCACCTGCCAGACCTCCAGGCTGCCCTGATCCTCTCGGTGGCCTACCTGCTACTCCAGGGGGGCTCCTCACAC
Host Sequence
Chromosome
chr10
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
131259554/129461290 (Hg38)
End
131259554/129461290 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/3641468; hsa-mir-202/Downstream/382009;
Nearest TSS
ENST00000439456/Upstream/183039; ENST00000482547/Downstream/5894;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/750896, chr10-CpG: 98/Downstream/5394
Nearby gene
MGMT(+5894) ;
Upstream sequence
gaaaatcctgcgggccttaagaatcatgctaaaccaactctgcctgtgctgtagaaatgtaacaacaaagcttggatgtgatagcacatctatttatagc
Downstream sequence
atgatttactggatattttaagcccactgatgagacttctcagaaaaagattcctttcaaaatattactgctcattgacaatgcacatagtcacccaaga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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