VISDB Viral Integration Site DataBase

VIS ID

TVIS42000433

Fusion event

EBV-MTG1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

75756

Orient

-

Integrated sequence

TGCATGGCCAGGCCCGACCTGCCAAAGATTGTCGGCCTGTGGTGAGGGATAGAAGGGGGGGGCACGGTGAGTGTCACTGAGACGGTCTGATGGGGGAAGA| |GGGCCAGGTCCTTTGGCAAAGAGACGTCCAGGCCCACGTCCCCGGGGTACTGGGGGTGGTTGATGGGACCCTTGTCCTCCTCCATCTGGGGGGTGGCATA

Chromosome

chr10

Cytoband

q26.3

Reference genome

Start

End

135218293/133404789 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-642a-5p ; hsa-mir-1236-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-877-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-4323 ; hsa-mir-1224-3p ; hsa-mir-634 ; hsa-mir-6868-3p ; hsa-mir-4758-3p

Nearest miRNA

hsa-mir-107/Upstream/33126;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/1437, chr10-CpG: 15/Downstream/14625

Upstream sequence

aaaatgaaagagaaggggaaaaaataaaagggaaaaggaggacagGGTgaaggaaggagggcaagaggtagcaagggagggaggacagaaggaaggaaga

Downstream sequence

aaggaagggagggagggagggagggagggGAAATGATTTAGGGAATGTTAGTTGTCAGGAATACCTTACTTAGAAAGAAGGAAAAAAATGCATGAAAAAA