Basic Information
VIS ID
TVIS42000434
Fusion event
EBV-ST5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
91564
Orient
+
Integrated sequence
TTCATGGACAGGTCCTGTGGGGGTGGGAGCCAAAGAGGCAGGCAGGGGCCGGTTGGCCCACGGGGATCCGGGTGGATGGAAGGGCCTGATCCTCTTTGGC| |TGACACACCTCTCGCCCCTCGAACACGTCAGATATGGCACTGCCCGCTTCCGGCTTTGGCAGGAACATACCTTCCCGGCTATCCCTGAGGCCCTTCTTCC
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
8729895/8708348 (Hg38)
End
8729895/8708348 (Hg38)
Orient
+
Location type
Intronic
Target gene
ST5
miRNAs that regulate target gene
hsa-mir-98-5p
Nearest miRNA
hsa-mir-210/Upstream/1473511; hsa-let-7a-2/Downstream/381964;
Nearest TSS
ENST00000527297/Upstream/267; ENST00000532930/Downstream/2837;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/19084, chr11-CpG: 20/Downstream/22407
Nearest cancer related gene
ST5(TSG, No orient, 0)
Upstream sequence
aaatcaaaactacaatgacataccatctcatgtcagttagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaatagg
Downstream sequence
aacgtttttacactattggtgggaatgtaaattagttcgaccattgtggaagacagtgtggtgattcctcaaggatctagaaccagatcccatttgaccc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate