Basic Information
VIS ID
TVIS42000435
Fusion event
EBV-MRVI1-AS1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
56307
Orient
+
Integrated sequence
TTGTCCCTGATGTCCGCCGTACACCTGCGCACGTGCAGGGCCGCATTCTTGGACCGGACGGCCACGTTGTGGACAAAGGGGGGCACTGAGGCGGCGGGAG| |GGGCCCCATACTCTATCGCTGTCAACAGCGCCAAAAAGCGGACGTCCTCCTCATCTACCCCAGCCTGTTGTCTGGCCACGGCCGTTCGGGCGGCCTCCGC
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
10589866/10568319 (Hg38)
End
10589866/10568319 (Hg38)
Orient
-
Location type
Intronic
Target gene
MRVI1-AS1
Nearest miRNA
hsa-mir-210/Upstream/59993; hsa-let-7a-2/Downstream/1088332;
Nearest TSS
ENST00000527297/Upstream/27022; ENST00000525578/Downstream/258;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/26924, chr11-CpG: 63/Downstream/182627
Upstream sequence
atttagttgtttccaatgtttggaactataataatgcttcagtgaaaatctttaggcatatagcattttatTTTTTGTTTATTTACATAAATCCCTAATG
Downstream sequence
GAATAATTGATAATGTTAAAATTATTATAAAACTATTATGAAATTATGATGAAACAACATGGAGAAATGCTTAAGTATAAAAAAAGAATTTTAGGCACAC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate