Basic Information
VIS ID
TVIS42000437
Fusion event
EBV-chr11 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
36066
Orient
+
Integrated sequence
GTAATGCGTTGCCGCCAGGTGGCAGCCTGTTTATAGATGTGCAGTACCCCTTAATGTTAGGTCTGCTTTAGGGCTGCCAGGTGGCGCAATCTAGGATTAA| |TTCACCTGTATCCCTTTCCCTCCACCCGCAGTAACCCAGCACTGGCGTGTGACGTGGTGTAAAGTTTTGCCTGAACCTGTGGTTGGGCAGGTACATGCCA
Host Sequence
Chromosome
chr11
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
17719658/17698111 (Hg38)
End
17719658/17698111 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA11C ; FRA11I
Nearest miRNA
hsa-mir-210/Upstream/1728490; hsa-let-7a-2/Downstream/689676;
Nearest TSS
ENST00000527297/Upstream/1171; ENST00000250003/Downstream/21457;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1891, chr11-CpG: 248/Downstream/21131
Nearby gene
LINC02729(-1172) ;
Upstream sequence
TAGAGAAGTTTCTTAGGATAACATTTTTAAAATGACCTATTAATTCATACTAAAATAGAAATCATCCCTCTCTCTCTCtttttttttttttttttttttt
Downstream sequence
ttttttttttttttttagaccgggtctggttctgtcacccaggttggagtgcaggtggagacctcctgggctcaagtcatcctcccaagctcagcctccc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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