Basic Information
VIS ID
TVIS42000438
Fusion event
EBV-LINC02546 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
119833
Orient
-
Integrated sequence
GCCATGGTGTCATCCATCTCCGCAGTCCGTTCTTCAGCTTTGGCATTGGTCCGGGTCCGGGTGGTCTGATTTTGATTCTGATCCTGGGTATTGGTCTTGG| |TCTCTCCTCCCCCATTGGCATGGATTGGCATAGGTGGGTGTGGCTCAGGCTCAGGTTCCGGCCCTGGGACGGCAGCAGCCGCCGGGACGGTGAAGTCGTG
Host Sequence
Chromosome
chr11
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
29630765/29609218 (Hg38)
End
29630765/29609218 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02546
Nearest miRNA
hsa-mir-210/Upstream/1131670; hsa-let-7a-2/Downstream/5332619;
Nearest TSS
ENST00000527297/Upstream/14300; ENST00000528119/Downstream/9584;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1498544, chr11-CpG: 25/Downstream/406907
Upstream sequence
CTAGAGAAAATCAGTTGCCTCACCTGCACACAACACAGAGGCCCAGTTGTTTCCACCGAGTCTGAAACAAAAGGCTTTCTCTGTATTATCCATGGTAAGG
Downstream sequence
AAAAAAAAAAAAAGAAGACAGAACAGAAGCTTCAAGTTAAGTATCTGGGCGTTAGTGGCAGTTAAAACTTGGTGAGAAACCAAGATCAGAGGCTGGCTTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate