Basic Information
VIS ID
TVIS42000439
Fusion event
EBV-chr11 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
43193
Orient
+
Integrated sequence
GTTATGTTAACGGGTGAGAGCCTATACTGCAGCCCAGACTCGGGGGGAGGAGGAAATGGTAAGAGTTATACTCTACTTATCTTTTTTGACACTACATTTA| |ACTGTTATGTAACAATGTTTGCTTATTTTCATGTTCAATAAACGCTATGTTAATGATGAAGAACCTGTGTTCTTTGGAAGTGGGCCCAATGGGGTAGTAG
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
57058768/57291294 (Hg38)
End
57058768/57291294 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/547313; hsa-let-7a-2/Downstream/349904;
Nearest TSS
ENST00000527297/Upstream/53980; ENST00000534162/Downstream/9385;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1416650, chr11-CpG: 78/Downstream/33103
Nearby gene
TNKS1BP1(+8335) ;
Upstream sequence
CGGGGCAGGTGCCCGGACTCGGAGGCCCGCAGAGAGCGGCACTTGTGGGTCACCCACCTGCGGGGAGAGCTGCGTGGCAGGGAGGGCGCAGGGGGCGGAG
Downstream sequence
GGGCCTGGGGCTCCCGGGGCTGGGCGGGGGTCGGCACTCACGGGACCAGGTACTCGACGCAGTTGCTGAGCGTCTGCTTCAGGCCCATGATGATGGCCAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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