VISDB Viral Integration Site DataBase

VIS ID

TVIS42000440

Fusion event

EBV-SERPING1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

95126

Orient

+

Integrated sequence

ATGCTCTCAGTTAACGAGCAGAGGGAATGAAAGCTCACGGCGAAACTTGGGCCAGCCCGGGGGGACCTCCCCTGCTGTTCCCCCAGTTTGCCCCATCGTT| |TCCCTGACGGCCTCAGGGGCCAAGCAAAACCGCGGGGGCATGGGATCCTTGCACTTAGCCAAGCCTGAGGAAACCTCCCCCGCCGTCTCCCCAGTATGCC

Chromosome

chr11

Cytoband

q12.1

Reference genome

Start

End

57370578/57603105 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-1273g-3p ; hsa-mir-498 ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6720-5p ; hsa-mir-7703 ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6776-5p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-508-5p ; hsa-mir-629-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-873-3p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-4284 ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p

Nearest miRNA

hsa-mir-129-2/Upstream/859124; hsa-let-7a-2/Downstream/38093;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/35092, chr11-CpG: 19/Downstream/43822

Upstream sequence

ATTGTAGCTTTTTAGCCCCATAGGGCACATTCGGCATACCATTCCTTTTTTTGCTTCTTTTCTCCCTTTCTTGATCCACCTCCATTCTAAGAGAGCAAAC

Downstream sequence

TGAAAACAAGAGATGGGAGCtactgtttatggaacatttgctatacctgactcctgggcttgggactttacaagagatttgtgagagagggattattatc