Basic Information
VIS ID
TVIS42000441
Fusion event
EBV-chr11 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
155443
Orient
+
Integrated sequence
GATCAGGTCAGCCTCGTTGGTGGCCGTGGGGAAGCCCTCCTCCCCCAGACACTCGATATCGAAGGCCAGGGCCTGGTAGGAGGGCCAGGAGCTGTCTTCA| |CGCCGGACCGAGAGGTCGCCCACCTCACAGTCGTACTCGAGCTCGGCGTACGAGTCCCGGTGCTGGAGGCGGGGGATGGCGCGGCGGCAGCTGTACCAGC
Host Sequence
Chromosome
chr11
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
85881775/86170733 (Hg38)
End
85881775/86170733 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA11F
Nearest miRNA
hsa-mir-10392/Upstream/4279897; hsa-let-7a-2/Downstream/107600;
Nearest TSS
ENST00000527297/Upstream/100851; ENST00000533228/Downstream/22749;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/101378, chr11-CpG: 18/Downstream/73610
Upstream sequence
AAAAATATTCCATAACCAAAAGTAAAAGTCCAGATGATACAAACGTAAATGTCAATCATTTTGGTGAAGTTGACAATATGGTGGTACATTTTTGGCAGAG
Downstream sequence
CAGTACCACCAATTAGACCTGCTGTTGACACTGAGGGTCACCCTCATTCCCAGAAATCCATAGTCAACAGCTTAGGAGGCTTAGGACTGAAGCCTTGCTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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