Basic Information
VIS ID
TVIS42000444
Fusion event
EBV-chr11 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
102657
Orient
+
Integrated sequence
ATCGAGTACCTTCCGAGGAGCGACGAGTATGTGGCCTACTACTGTGGCCGCCGCATCAGGCTGCATGTGCTCTTCCCCCCGGCCATCTTTGCCGGAACGG| |TGACCTTCGACAGCCCGGTGCAGCGCCTCTACCAGAACATTTTCATGTGCTACCGCACGCTGGAGCATGCCAAGATCTGCCAGCTCCTGAACACGGCCCC
Host Sequence
Chromosome
chr11
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
101258975/101388244 (Hg38)
End
101258975/101388244 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/5046718; hsa-let-7a-2/Downstream/131576;
Nearest TSS
ENST00000527297/Upstream/257720; ENST00000532529/Downstream/67333;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/258538, chr11-CpG: 114/Downstream/194382
Upstream sequence
CCATTACAAAAATTGTatttatttattcctatttattcagtagaaaatatttttcatgtacattttgagttctagacatagagtggtaggcatagtggac
Downstream sequence
aagatccctgccctcactgaacttacattcaattagaaaaagtaagtcaacagtcaataacagcacagtgggataatgcagggtgcaagggaacctaacc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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