Basic Information
VIS ID
TVIS42000445
Fusion event
EBV-LOC105369489 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
66669
Orient
+
Integrated sequence
ACTGAACGAGCCTGTGAATCTTGCCAATAAACGTTTATTGCCATGTCCAAGTTGTTGTACGTGCGTGATCATGAGGGCTTTGCCTGCCTAACGGTCGAAA| |CCCACCGCAACCGCTGGTTCGCGGCTCACATTGTCCTCACCAAGGACTGCGGGTGTCTCAAGCTACTCAATGAGAGGGACTTGGAGTTTTACAAGTTCCT
Host Sequence
Chromosome
chr11
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
110880166/111009442 (Hg38)
End
110880166/111009442 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105369489
Nearest miRNA
hsa-mir-10392/Upstream/7159462; hsa-let-7a-2/Downstream/338315;
Nearest TSS
ENST00000527297/Upstream/296253; ENST00000635886/Downstream/80926;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/296282, chr11-CpG: 114/Downstream/289137
Upstream sequence
atagagagagtctatatctcaataaaaaaaaaaagaaTTAAGTTGACTTTCAAACTGCAAGAGTCGAAAAAAAAAAAAGAGAGAAAACAAGTGCCTAGTG
Downstream sequence
AAATTTTGCTTTCAAGATGGTGTAGACAAAGGGATGGATTTAGATTGAAGTAAATATATGAAAATTCTAGTAATtagcgattccttctgaagagtgtggt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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