Basic Information
VIS ID
TVIS42000454
Fusion event
EBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
67587
Orient
-
Integrated sequence
GATTACACCATGCTGGTGGTAGATGACCTTTGAGTCAGGGTGGCTACTTGCTCAGGTTTCTGGGCATAAATTCTCCTGCCTGCCTCTGCTCTGGTACGTT| |GGCTTCTGCTGCTGCTTGTGATCATGGAAACCACTCAGACTCTCCGCTTTAAGACCAAGGCCCTAGCCGTCCTGTCCAAGTGCTATGACCATGCCCAGAC
Host Sequence
Chromosome
chr12
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
25137780/24984846 (Hg38)
End
25137780/24984846 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/772351; hsa-let-7i/Downstream/889174;
Nearest TSS
ENST00000382841/Upstream/35387; ENST00000557270/Downstream/12073;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/35707, chr12-CpG: 37/Downstream/210259
Nearby gene
C12orf77(+8578) ;
Upstream sequence
aatttcacagggatgttctaaaaaatggcgtaaaaaacacatctcagaataattcttcctgagtagcaagtggctagggGAGATACATTTGGAGGGCTAT
Downstream sequence
TGGAGTGCAGACAGGCTGTGGTCATTTCCTGGTGCTTCTCTGCACAAGCATATGTCAGTTAGAATAGCTTTCCATGGTTCCAAAAAGAGCCTCCAGGCCC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate