Basic Information
VIS ID
TVIS42000457
Fusion event
EBV-DTX3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
52499
Orient
+
Integrated sequence
GGCTCGGGTATCCATCTCCTCCCAGGCGTCCTGGAAGAAGATGAAGCCGGTGGGTGGACCGGCGATGCGGTGGCGGGTGAGGCGGCGCGCGTCTTCCCCG| |TCGTTGCTGCCGCGGGTGGTTGAGGGCATGCCCCCCCTCCCGGAGGCTGGACTCCTGACCAGCCTGTAGGTGAGGACCGAGTCCGACAGGAGGTCTCCCA
Host Sequence
Chromosome
chr12
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
58000188/57606405 (Hg38)
End
58000188/57606405 (Hg38)
Orient
+
Location type
Intronic
Target gene
DTX3
miRNAs that regulate target gene
hsa-mir-320a
Nearest miRNA
hsa-mir-1228/Upstream/87146; hsa-let-7i/Downstream/142213;
Nearest TSS
ENST00000382841/Upstream/1398; ENST00000550300/Downstream/1095;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1304, chr12-CpG: 28/Downstream/3692
Upstream sequence
ATCAGCAACTGATGGACCGTCTTCACACTTGCAGCCGTGAAACGTCTCTACACGTACAGGCCGTGGCTACTTTTTTGAACACTATGTTCTTGATGCCAAA
Downstream sequence
TCACCACACACGTGAAAAAATGTATATTTGGGGATATTGTTATTGAGCCTGTAATCTAATGCCATCTCTGGATAGTGGTTTGGTGATAGGAGATGTTAAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate