Basic Information
VIS ID
TVIS42000458
Fusion event
EBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
71911
Orient
-
Integrated sequence
TCGAGTTCCAGAATGTGGCTCTCTGCAGAGGGGAGACAAAAGGTGGAGACTGCCTTGAGCACCTCTGTCTCAGGCACCGGATGCCCCCGGCTCCACGGCC| |CCGGCCACTGGCCGGTGTAGCTTCTTACCTGCGGGATCCTCGTTGGAGGAAATGCTGCTAGTTCGGGAGAGTCTCTGAGAAGGAACCATCTTGTCTGTCT
Host Sequence
Chromosome
chr12
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
60228514/59834733 (Hg38)
End
60228514/59834733 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1228/Upstream/2010041; hsa-let-7i/Downstream/2425626;
Nearest TSS
ENST00000382841/Upstream/65674; ENST00000552378/Downstream/258131;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/238007, chr12-CpG: 117/Downstream/2356254
Upstream sequence
AACTTATGTGATCATCAGACAGACCTGCCTTGTGCACAGTTAACACTCAACTAACATGTCCTAAATGTCATAGTGCCAAGAAtttttttttttttttttt
Downstream sequence
ttgaaacggagtctcactctgttgcccaggctggagtgcagtggtacaatctcagctcactgcaacctccacctccctggttcaagcaattcccctgcct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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