Basic Information
VIS ID
TVIS42000461
Fusion event
EBV-TRHDE integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
106402
Orient
+
Integrated sequence
GTTGTTGGTCCCGCCCATCATCCCCCGAGCAGCTTTGGCAGACCACCTGTGCTGGAAAGAGAGGCTGGAAGATGAGGCCCTGCTCATCCTCCACCCTGGC| |GGCGGACAAGAGTCTGCGGTCTCGGGTTCTAAATGAAAGGTCAAATAGGTCCTTCTCGGCGGCATCGGCGAGCATAGCAATGAGCCCCCCGCTGCGCCTG
Host Sequence
Chromosome
chr12
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
72858824/72465044 (Hg38)
End
72858824/72465044 (Hg38)
Orient
+
Location type
Intronic
Target gene
TRHDE
Nearest miRNA
hsa-let-7i/Upstream/2880221; hsa-mir-1178/Downstream/6954213;
Nearest TSS
ENST00000382841/Upstream/190535; ENST00000549401/Downstream/95495;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/191273, chr12-CpG: 38/Downstream/2072668
Upstream sequence
aaatactgctactgagaaacagactttaaTTTTATTTGATTTTTTAAAAAATGAGTTTCCACATATTTTTGCTTATGAAAGAAGAAACTCTTAGAAGATA
Downstream sequence
ATTTTCTGAATGCATCTGAATTGGCAGTGGAGACCGAAAGATGTTATTCATATAATTCCTTTAAGCATCTCTATTTGGTTTGGTCACTTACCCTCCTCTC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate