Basic Information
VIS ID
TVIS42000462
Fusion event
EBV-LOC105369838 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
144464
Orient
+
Integrated sequence
TTTGTGTGAGCCGGAAGTTGGCAATGGGGTGAGGGTGGCGCTGGTTAAGCTGACGACCTCCCAAGGTCTCTCACCCTGGGTACACAGGTGGGGCGGCAGC| |CTCTAACTTTGGCTGTGGCCTCTATTTCCTCCCTTTCCTAGCCAGGGCCATGTGTTCCTGCATGTCTACTTGCCTCCTGTGGTGGCAGAGCTTGGCCCTG
Host Sequence
Chromosome
chr12
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
73401656/73007876 (Hg38)
End
73401656/73007876 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369838
Nearest miRNA
hsa-let-7i/Upstream/3423053; hsa-mir-1178/Downstream/6411381;
Nearest TSS
ENST00000382841/Upstream/279032; ENST00000550723/Downstream/151314;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/734105, chr12-CpG: 38/Downstream/1529836
Upstream sequence
tcctgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccgcgcccagctaattttttgtatttttagtagaga
Downstream sequence
cggggtttcaccatgttagtcaggatggtctcaatctcctgacctcatgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccacc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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