Basic Information
VIS ID
TVIS42000463
Fusion event
EBV-LOC100507377 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
166293
Orient
-
Integrated sequence
ATCCATCTGCTTCTGGCTCTTCTGGGAACACCCCCACCCCACCGAACGATGAGGAACGTGAATCTAATGAAGAGCCCCCACCGCCTTATGAGGACCCATA| |TTGGGGCAATGGCGACCGTCACTCGGACTATCAACCACTAGGAACCCAAGATCAAAGTCTGTACTTGGGATTGCAACACGACGGGAATGACGGGCTCCCT
Host Sequence
Chromosome
chr12
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
74554303/74160523 (Hg38)
End
74554303/74160523 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC100507377
Nearest miRNA
hsa-let-7i/Upstream/4575700; hsa-mir-1178/Downstream/5258734;
Nearest TSS
ENST00000382841/Upstream/121437; ENST00000519948/Downstream/123146;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1886752, chr12-CpG: 38/Downstream/377189
Upstream sequence
TTCCTAAACCATTTGTGTGAAATGAAGGTATGATCTGGTGTGATTGAGGCCAGGAGTCTGTAGGTTATGAAGGACAATATGGCCTTGAGTACAAAAAGGA
Downstream sequence
GAGAAAGAGGCATGTCGTGCCCTGCTGGGGCACCCTTATACTACTTATCATTTTAATCCTAGGGCTGACTTATGAATGAACTCAAAAGGGGCTAGACTGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate