VISDB Viral Integration Site DataBase

VIS ID

TVIS42000464

Fusion event

EBV-KRR1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

75863

Orient

+

Integrated sequence

GTCCTTTGGCAAAGAGACGTCCAGGCCCACGTCCCCGGGGTACTGGGGGTGGTTGATGGGACCCTTGTCCTCCTCCATCTGGGGGGTGGCATATCTGAAG| |GCAGCCAGGTGGATTTTGAGCTCCGATGGACGCAGCGTGGAGTTGTAGCGCCGCTGATTCTGGAGGATTAGCCGGAGTTCCCCCGTGTAGCCGGGATCGA

Chromosome

chr12

Cytoband

q21.2

Reference genome

Start

End

75902379/75508599 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6807-5p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-4468 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-6833-5p ; hsa-mir-3911 ; hsa-mir-3190-3p ; hsa-mir-3650 ; hsa-mir-3148 ; hsa-mir-6124 ; hsa-mir-7978 ; hsa-mir-298 ; hsa-mir-4670-5p ; hsa-mir-3158-5p ; hsa-mir-582-3p

Nearest miRNA

hsa-let-7i/Upstream/5923776; hsa-mir-1178/Downstream/3910658;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/117138, chr12-CpG: 26/Downstream/2840

Upstream sequence

gtatgaataacaacagtgtccactctcatggagattagtacctaatggcaagaaaatagacaatTCTTATGCTGAAATTTGTAAAGTATGCTATTTGGGA

Downstream sequence

TGTTGCTTGTCACTCCCCATCTCACTAGTAGCTTCCCTATCCCAGCTACTTCTGATCTCTGAATTCTCACCCCCCAAACCCTACTCCATTGCACCATCAC