Basic Information
VIS ID
TVIS42000465
Fusion event
EBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
4616
Orient
-
Integrated sequence
GAGGTGGAGGAGCGCAGCGTGGGTGAGGTGCTGCAGACCCTGCGCTCCATGAACATGTACCCGGCAGTCCTCGGTCGAGTGGGCGAGCAAGGTCCAGATC| |AAATGTTTGAGGTGCAGCACGGCCCAGAGACGGTGTTGCGCCAGTCGCTGCGCCTGCTGCTGGGAACCTGGTCATCCTTTGCCAGCGAGCAGTACGAGTG
Host Sequence
Chromosome
chr12
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
78871605/78477825 (Hg38)
End
78871605/78477825 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/8893002; hsa-mir-1178/Downstream/941432;
Nearest TSS
ENST00000382841/Upstream/34873; ENST00000546563/Downstream/62850;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1411663, chr12-CpG: 38/Downstream/326459
Nearby gene
MRPL11P3(-4402) ;
Upstream sequence
TTCCATGTTCCAAGTAATGCCATTCTTAGTAACCTATACCCAGGTTTCTGTCTCTGTTCCATGGGCTGCTGGGTTGGGGGCCATGGGAATTGGGAGAAGG
Downstream sequence
GGTTTCTCACTTTCCTTCCATTTTTCCGCCCTACCAGGTCACACGACCTACAAGTAGGGAGCAGGGAAAGAAGAGTGAGCCTGCATGCCAATTCTAAGCT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate