Basic Information
VIS ID
TVIS42000466
Fusion event
EBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
118857
Orient
-
Integrated sequence
CTTGTCTCTGGCGTGTGCCATCGCGTCTGGACGCAGAAGGCCTCCCGGCCTCTTTTATAGCTAGTCTCCACACCCAATACTCTACTGAACCATCACATAC| |ATGACCTCCTCGAGGTATGCAGGGAATGAGCGGTCCGTGAGCCGGTCAACACGACATTGCTTCCGTTTCATGCCTCCAGCTGCCCCTGACCAGTTAGGAC
Host Sequence
Chromosome
chr12
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
83691096/83297317 (Hg38)
End
83691096/83297317 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA12B
Nearest miRNA
hsa-let-7i/Upstream/2138856; hsa-mir-1178/Downstream/3447751;
Nearest TSS
ENST00000382841/Upstream/125727; ENST00000642846/Downstream/364402;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/609450, chr12-CpG: 17/Downstream/1614104
Upstream sequence
atcaatatcttacattagtttggtgtgtttgttacaatttatgaggcaatattaatatattaggattaactgaagcatacattttatttagattccctta
Downstream sequence
gtttttactaatgtcattttccttatccagcatcccatgaaagataccacattatattgagttatcctgtttcctttggcttctcttggctatgacgatt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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