Basic Information
VIS ID
TVIS42000468
Fusion event
EBV-RMST integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
51717
Orient
+
Integrated sequence
GTCGGCCATCGTGAGGCCCCGGCCGCGTTAAAGTAGAACTGCACGTCCGGCAGATTGTGCCGATAGGTGAAACACTTCCAGATGATGTTTTTTCTGTTGG| |CCAGGATGGCCACGGTGGGGGGCCTGGCCTCCTTAGGTTTGGCGGCCCTGGCCTCGGTGAGAAGCTCGCGTAGCCACACGGCCTGGCGTGCAAAGATGGA
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
97871951/97478173 (Hg38)
End
97871951/97478173 (Hg38)
Orient
+
Location type
Intronic
Target gene
RMST
Nearest miRNA
hsa-let-7i/Upstream/2168189; hsa-mir-1178/Downstream/13736;
Nearest TSS
ENST00000382841/Upstream/201964; ENST00000548911/Downstream/814272;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/570664, chr12-CpG: 31/Downstream/978739
Upstream sequence
TCTTTTGGTTTATTTCTTTTATCAACTGCTTCAGATAGAAGAGAACAGGAAGCTTTGTTGCTATTTTGCTTTAGGTTTTACCTTCTCCACCCTACAGACC
Downstream sequence
CTTTCCTGAGAAAGGAAATAAAGGATGTTATGATCATAGGAGCAAAAATGAACAGCATTATTGGAGAGGATTAAATGTAAAGGAAGTGGAAGGTAAAAGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate