Basic Information
VIS ID
TVIS42000469
Fusion event
EBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
147710
Orient
-
Integrated sequence
TTTATTGTGGCATCCTAAGGAGGGATTCTGGAGTGCCTTTCGCGTGAAGCATGCCCTGAGACGTACTCGAGTTAGGACTTAATCGCTCCTGTGCCGCTGG| |ATGAGGGAGCGCCAATTTGTACATCCTAGCTCTGGCCATAGAGTTAGCCCACCCTTGTGTCTCCCTTTGGCCTTTGCGGTGCCAATTTCCGGTGGTTTCC
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
98499599/98105821 (Hg38)
End
98499599/98105821 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/110373; hsa-mir-1178/Downstream/2084063;
Nearest TSS
ENST00000382841/Upstream/829612; ENST00000548911/Downstream/186624;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1198312, chr12-CpG: 31/Downstream/351091
Upstream sequence
TTTTTGTACTATACTATTTAATTGGAAGCAGACTACTATGCATAATTTTATCAAGCATTTTCTTTGAATTTCCAAGTAAATTAGATTCTGAAACATTTGA
Downstream sequence
ATTTTCTTCTGTTTTCAAGGCATATGAAGGAGTTATGGGTATACATTTTAATGGGTATAGTCTCATAACAAATTTCTTTTGCaaaaattaaaataattta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate