Basic Information
VIS ID
TVIS42000471
Fusion event
EBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
52511
Orient
+
Integrated sequence
CATCTCCTCCCAGGCGTCCTGGAAGAAGATGAAGCCGGTGGGTGGACCGGCGATGCGGTGGCGGGTGAGGCGGCGCGCGTCTTCCCCGTCGTTGCTGCCG| |CGGGTGGTTGAGGGCATGCCCCCCCTCCCGGAGGCTGGACTCCTGACCAGCCTGTAGGTGAGGACCGAGTCCGACAGGAGGTCTCCCAAACCCCCATCTC
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
107622521/107228743 (Hg38)
End
107622521/107228743 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/2637027; hsa-mir-1178/Downstream/1407067;
Nearest TSS
ENST00000382841/Upstream/134914; ENST00000550706/Downstream/89670;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/134710, chr12-CpG: 203/Downstream/89083
Upstream sequence
ttgaatagcagcattctgtatctgaaagttctataaaacagagactcagtataaaactgaaggaaacctagacaaggaaaaatctttaagttggtttact
Downstream sequence
ccaccagtttctgatgtccttcctcggtgacactccagaggATCAAAGCCAGGTCTAGGATTGTAATTCAGAGTTCAGAGGTGGCAGGAATAGGAGTGAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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