VISDB Viral Integration Site DataBase

VIS ID

TVIS42000472

Fusion event

EBV-TAOK3 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

107176

Orient

+

Integrated sequence

ATGTTTGTCTACATCACACTGGTCTTTATCGCGGACTGCGTGGCTTTCATCTACTACGCCTGCGGCGAGGTGGCGCTAATCAAGGCCCGAAAAAAGGTCT| |CGGGTCTTACAGACCTCTCGGCCTGGGTCTCGGCAGTGGGCTCCCCAACCGTGCTGTTTTTGGCCATCCTCAAGCTCTGGTCCATACAGGTCTTCATCCA

Chromosome

chr12

Cytoband

q24.23

Reference genome

Start

End

118761217/118323412 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA12E ; FRA12C

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-335-3p ; hsa-mir-548aw ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-129-5p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-6780a-3p

Nearest miRNA

hsa-let-7i/Upstream/1895094; hsa-mir-1178/Downstream/1390222;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/186486, chr12-CpG: 127/Downstream/48107

Upstream sequence

ACATCACATTTTAACTGTCTTTTGGACACTTTATGAACATCCTATGCACATATTCACAAACCTTCCAATACTCCTTGCATTTCCTTTTCCCCTGCTTTTT

Downstream sequence

ATATTATTCAAGAGTCAAAGAACGTTCCTCTGTCAttatcatcaattctctgtattaaaattatctgtacacatttcagttgcctcatatgacaaagttc