Basic Information
VIS ID
TVIS42000475
Fusion event
EBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
122582
Orient
-
Integrated sequence
CGCACGGCACGGGTGAAAGTGGGGCAGGTCATGAATGAGGCGCTGAGGTCCCTGATCATGCCCACGGTGGGGCGGAGGTCGGAGATCTCCAGCAGATCCC| |TGAGCGTCCCATTCTCCAAATTGTCGAGGATGTCCTCGTCCCTGGTAAAATGGTGGCTGAAGGCTGGCCCGTTGTAGGCCAGGGTCTGGGCCACGTGCTG
Host Sequence
Chromosome
chr12
Cytoband
q24.32
Reference genome
GRCh37/hg19
Start
127111674/126627128 (Hg38)
End
127111674/126627128 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA12E
Nearest miRNA
hsa-let-7i/Upstream/1711469; hsa-mir-3612/Downstream/1666964;
Nearest TSS
ENST00000382841/Upstream/182247; ENST00000544711/Downstream/63132;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/435479, chr12-CpG: 83/Downstream/99104
Upstream sequence
AGGAACCAAAAGCAGCTCTGTATGGCTGGAATCAGTACAATGTAGAAATGTTCAGAGATAAAGTTCTCTTTGTTTCTTTCTATATTTCCATTTACTTCTC
Downstream sequence
AGTCTCTCTCTCtttttttctttgagacagggtctcactctgtcactcaggctggagtgcagtggcgtaatgacggctcactgcagcctcaacctcccag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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