Basic Information
VIS ID
TVIS42000476
Fusion event
EBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
1716
Orient
+
Integrated sequence
CTACTACTGCCTTACACTGGAAAGTGAGGAGCGCCCACCGACCCCATATCGCAACACTGTATAAAGGTAAGTATTATTAAATTTTAGAGACACTATCACG| |TGTAACTTGACGTGCAAGGATGGAAGAGAGGGGCAGGGAAACGCAAATGCCGGTTGCCCGGTATGGGGGCCCGTTTATTATGGTAAGGCTCTTCGGGCAA
Host Sequence
Chromosome
chr12
Cytoband
q24.32
Reference genome
GRCh37/hg19
Start
127225901/126741355 (Hg38)
End
127225901/126741355 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
LINC00943 ; LINC00944
Nearest miRNA
hsa-let-7i/Upstream/1825696; hsa-mir-3612/Downstream/1552737;
Nearest TSS
ENST00000382841/Upstream/4348; ENST00000616373/Downstream/310;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/13372, chr12-CpG: 78/Downstream/404611
Upstream sequence
GGCATATGTACTAAGGCTGGAACAATTCTGCTTTGATTTGTCATCAAACACTTGGTATTGGGCTTTGAAAGGGAAGGAAAATATTGTGTAATTCAAATGA
Downstream sequence
GCTTTTCATTTGAAAATGGAAGGCTCTTTGTATAGCTATCGTTCCTAATTATCAGTAGATATTTCTCTTCTAAGATGTACACCATAATTTTATGACCTGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate