Basic Information
VIS ID
TVIS42000480
Fusion event
EBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
99873
Orient
+
Integrated sequence
ATGGCCAGCTTTGAGCTAATGCCATAGTCACGGATGCTGCAGAGGTTCAGGGACTTGTCCTCTATCGTCTCATACAGTTTGTTAGTATTGTGTTCCAGGC| |AGCACACGAAGCCTGCCTCATCCTTGACCATTAGCCTGGGCATGCGTGAACTGCCAGCGTCCTGAGGCTGCTGCTTTCCTCGGATGCCAAAGAAGACGTT
Host Sequence
Chromosome
chr13
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
33500200/32926062 (Hg38)
End
33500200/32926062 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/8763558; hsa-mir-1267/Downstream/6737972;
Nearest TSS
ENST00000623511/Upstream/14412; ENST00000487852/Downstream/90371;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/338364, chr13-CpG: 157/Downstream/89728
Upstream sequence
cctgttgaataggttgaggagaaggaggaaaaggaaggattagtcttgttgtctcgagggtggcaaggtggaagagagagaggaggtggaagaggaggca
Downstream sequence
ggagagggaggcgcactgtaacttttactgaaaaaaatccatgtataaatgaacctgcacagttcaaacctgtgttgttGttacatattttcaactagct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate