VISDB Viral Integration Site DataBase

VIS ID

TVIS42000481

Fusion event

EBV-STARD13 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

65770

Orient

-

Integrated sequence

AAATATTCGAACATATGTACTTTACGGCCCTCTGCACCAGTAGTCTGATTGGACTTCACACCAGGAAGATTTTTCCGGGTTTCAAACAGAGCAAGTATGC| |CGGGGGGTGGTTTCACTGGCACGATTGGGCAGGAACAGACCTTTCTATTCCCAGGGAAATTTGGTCTCGCCTCTCTGAACGCATTGTGAGGGATGGGCTT

Chromosome

chr13

Cytoband

q13.2

Reference genome

Start

End

34114899/33540762 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-125b-5p ; hsa-mir-122-5p ; hsa-mir-4452 ; hsa-mir-3658 ; hsa-mir-1231 ; hsa-mir-183-3p ; hsa-mir-516b-5p ; hsa-mir-4276 ; hsa-mir-4653-3p ; hsa-mir-219a-1-3p ; hsa-mir-570-3p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-148b-3p ; hsa-mir-152-3p ; hsa-mir-148a-3p ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-4295 ; hsa-mir-9-5p

Nearest miRNA

hsa-mir-2276/Upstream/9378258; hsa-mir-1267/Downstream/6123272;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/190118, chr13-CpG: 66/Downstream/1658

Nearest cancer related gene

STARD13(TSG, No orient, 0)

Upstream sequence

aagattcatgtacagtgtgtgcacctatgcttttatttctcttgggtaaataccttgaaatggaatttctaggtcatatgggatgtttaattttatagga

Downstream sequence

aactatcaactgtctgccaaagtggctgtagcattttgctcttccgccaacagcgcatgaaatttacagttgctttaaatcctccccagtacttgatatt