VISDB Viral Integration Site DataBase

VIS ID

TVIS42000483

Fusion event

EBV-NBEA integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

124068

Orient

+

Integrated sequence

TGTACTGCATTCTTCTGTTGAGGGGGTATGGGGACTGAGTGTCATTGTACATCTTTTGCAGGCTTTCCACGGCCACCGCGTGGTTGCCCAGCTTGATGAC| |GGCGGCTGAGATCGGCACCCGGGGCTGATCCTCGACCCCTGCGGCCACAGCCGGCAGGTCAGACTTGGTGCTTCCGGCTTTTTCCGGTGAGTCCACGATC

Chromosome

chr13

Cytoband

q13.3

Reference genome

Start

End

35950939/35376802 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-548b-3p ; hsa-mir-335-5p ; hsa-mir-9-5p ; hsa-mir-128-3p ; hsa-mir-21-5p ; hsa-mir-935 ; hsa-mir-18a-5p ; hsa-mir-377-3p ; hsa-mir-485-3p ; hsa-mir-127-3p ; hsa-mir-409-5p

Nearest miRNA

hsa-mir-2276/Upstream/11214298; hsa-mir-1267/Downstream/4287232;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/433512, chr13-CpG: 54/Downstream/93905

Upstream sequence

TCCTAGCAGTCCTGATTATCCTGATTATCATATTAGTGTTAAATATTTTTTAATATCAGAAGGAAAAAAGAGCTTGTGTGTGTTTGTAATAAGCAGTTAT

Downstream sequence

TATCTTTATTCGTAGTTTCCTCAGTAGAAAGAAACATATATCTAAGCTATTCCTAATTACTGGCCTGAGGTTTGCCTAAAGCCACAGCTAACTCGCAGAC