Basic Information
VIS ID
TVIS42000484
Fusion event
EBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
114658
Orient
+
Integrated sequence
CCGGCTACTGTTCGCGGCGGATGCCATGACGTGCCAGAATATATCCCCTCTCCTCGGGGGTGAGTGCCAATTGGCCTTTAATAACAAAGCCCCCAGGCAG| |CACCAAAAATGCCTGCCCGTCCGATGTGGTGGCCAGGTGGACGCAGTGCCCGTCAGTTCCAAGGGCTACTAGCTGGGAAGCAGCCCCAACCAGCCCACCC
Host Sequence
Chromosome
chr13
Cytoband
q14.12
Reference genome
GRCh37/hg19
Start
45644508/45070373 (Hg38)
End
45644508/45070373 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/874173; hsa-mir-1267/Downstream/4926042;
Nearest TSS
ENST00000623511/Upstream/39169; ENST00000494087/Downstream/12752;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/80506, chr13-CpG: 41/Downstream/50014
Nearby gene
RN7SKP3(-9287) ;
Upstream sequence
AGACTGTGAGGTGATTAGTCTAGAATGGAGGAGGTGGTTAGACTGTTGAAGGAGAAGGAGATTTAGAGTAGTAGAGTGTTTAGGAAAAGGGGTTTTGAAG
Downstream sequence
TTGTGGGCACATGCTGTAATACAGGGAGGCTGCAGAAAAGTTTCTGTAAGCCTGCCTCCGGTTGACCATGTGGTACCCCACTGAGCAGACTGGTGAACTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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