Basic Information
VIS ID
TVIS42000485
Fusion event
EBV-PHF11 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
44018
Orient
-
Integrated sequence
GGTCTCTGGGATGTGAAGGGAGGTGCCCTGGAGCAGGAGATGCATGATTAGGCGCCCTTTTCCATTTGTGCTGAAGATGGGGCAGATGGTGCCACAAAAG| |TGTCCGGTGACCAGGTAAGCGTAGAGAAGGCTGGGTTGGGAAAGTCCAGCCTTTACTGCACTGGGAGAGCTGCTGAGCAGAGACACATAGAAGGTCTTGT
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
50076909/49502773 (Hg38)
End
50076909/49502773 (Hg38)
Orient
+
Location type
Intronic
Target gene
PHF11
Nearest miRNA
hsa-mir-2276/Upstream/5306573; hsa-mir-1267/Downstream/493642;
Nearest TSS
ENST00000623511/Upstream/5660; ENST00000460489/Downstream/19156;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/6190, chr13-CpG: 80/Downstream/82477
Upstream sequence
cagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggaacacaaggtcaggagatcgagaccatcctggctaacacggtgaaacccc
Downstream sequence
gtctctactaaaaatacaaaaaattagccgggtgtggtggcgggcgcctgtatcccagctactcgggaggctgaggcagcagaatggcgtgaacccagga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate