VISDB Viral Integration Site DataBase

VIS ID

TVIS42000486

Fusion event

EBV-WDFY2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

82581

Orient

+

Integrated sequence

GGTCTTAACCATCCCGGGGTTCCCGTGTCTCCTGCCGTTAACCAATATCATCTCAGCCAGGCTGCCTTTGGGTTACCTATTGATGAGGATGAGAGTGGCG| |AGGGGTCCGATACCTCCGAGCCGTGTGAAGCTCTTGATTTGTCAATCCATGGCAGGCCCTGCCCTCAGGCCCCCGAGTGGCCTGTTCAAGAGGAGGGTGG

Chromosome

chr13

Cytoband

q14.3

Reference genome

Start

End

52301123/51726987 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-19b-3p ; hsa-mir-2355-3p ; hsa-mir-3942-3p ; hsa-mir-676-3p ; hsa-mir-6749-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-5100 ; hsa-mir-124-5p ; hsa-mir-6852-3p ; hsa-mir-4437 ; hsa-mir-3909 ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-545-3p ; hsa-mir-10b-3p ; hsa-mir-4255 ; hsa-mir-24-3p

Nearest miRNA

hsa-mir-15a/Upstream/174320; hsa-mir-1267/Downstream/1083063;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/141888, chr13-CpG: 96/Downstream/76698

Upstream sequence

GACTTCATCATCTAACCTTCTGTCCTAACTGTACCTTGATAATACGtttatttgtttgtttgttttgagacggagtttcactcttgttgcccaggccaca

Downstream sequence

gtgcagtggcacattcttggctcactgcaacctctgcctcccaggtccaagggattctcctgcctcagcctcccgagtagctgggataacaggcatgcac