Basic Information
VIS ID
TVIS42000487
Fusion event
EBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
106961
Orient
+
Integrated sequence
AGAATGACACGTTCGTCTATAGAACGTGGGTCAAAACGCTTGTTGTGTACTTTGTGATGTTTGTCATGTCGGCGGTGGTCCCCATCACCGCCATGTTCCC| |CAACCTGGGGTACCCCTGCTACTTTAACGCACTGGTTGATTACGGGGCACTTAACCTGACCAATTACAACCTGGCCCACCACCTGACCCCCACGCTCTAT
Host Sequence
Chromosome
chr13
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
56517451/55943317 (Hg38)
End
56517451/55943317 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/768769; hsa-mir-1267/Downstream/5256481;
Nearest TSS
ENST00000623511/Upstream/359793; ENST00000377931/Downstream/1197601;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2741107, chr13-CpG: 25/Downstream/1197520
Upstream sequence
tgacataaattgcaaatatttttttccagtttatcttttggctttgctcataatatttgttgtgtttttgagtcatagcttttcccactccaaggttaca
Downstream sequence
aagaaactttcctatctaaagcttatgttttcattttctacatttagatccctaattcatttggaatctgtcccagtatacattgtgaaatacagattct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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