Basic Information
VIS ID
TVIS42000488
Fusion event
EBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
161961
Orient
+
Integrated sequence
GACGTTGCTCTCTTCGTGGGCCCGGGAGCCCCCGTCCACAAAGAGGGCCAGGTCAGAGTACTCCTCCGCGCTGGCCCCGCTGGGGACAGGGACCGAGCGC| |CGCCTGGAAAAGTTGTGCCACAGGTACAGGCTTGAGAGCTTAGTGTCCGGGAATAGGGTCTTGTGGTAGGTGTTGAGGAATTTCATGTAGGGCCCGTTGA
Host Sequence
Chromosome
chr13
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
62058654/61484521 (Hg38)
End
62058654/61484521 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/284641; hsa-mir-1267/Downstream/4481809;
Nearest TSS
ENST00000623511/Upstream/56575; ENST00000455977/Downstream/545027;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1086610, chr13-CpG: 36/Downstream/2327065
Upstream sequence
actccatcttaaaagaaaaaaaaaaTTACAGACACATTCTGCATAAGTAAGGCAGATGTGGAAAAGTGATTACAACTTGAAGAGGTTAATGTTTCCAAAT
Downstream sequence
AAAATAGTATAGAACTATAGAAAGAAGGTATGTAAAGATTAGTGGATGAATTTTGACCAGCTATATTGAAAATTCGAGTAACATCTGTGAATAATCTAGC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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