Basic Information
VIS ID
TVIS42000489
Fusion event
EBV-LOC105377815 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
108980
Orient
+
Integrated sequence
GAAGGCCGTCACAATGTTCACCCGGGGTGAGCAGTCTCTCCCGGGCTTGCCACCCCCACTGTGGCGGACGTAGTCTCCAACAATTTTGTATTGGAGGAGC| |ACCTGGTAGAAGTAGTTGTGCCGTGGATTGATGAAGATGTTGACTGGGACCCGGTCTTTAATACCAATGCGCCCCGCATTTTCGCTTGGGTCCGTCATTA
Host Sequence
Chromosome
chr13
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
64427936/63853803 (Hg38)
End
64427936/63853803 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA13B
Target gene
LOC105377815
Nearest miRNA
hsa-mir-1297/Upstream/2653923; hsa-mir-1267/Downstream/2112527;
Nearest TSS
ENST00000623511/Upstream/105804; ENST00000437777/Downstream/222208;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/9257, chr13-CpG: 92/Downstream/3376573
Upstream sequence
CCTCTTATACACTGTTTCAGATCCTCTAGGTCTCAGCCATCTCCAGGCTTTTTGCCCTTTTGTTCCAAGCCAAGTGCATATCATGTTAATCAATTCTGTG
Downstream sequence
TGAATTCTCATCAACCTCTATGGGTACAACCATTCTTGAGAAGGTACATGTCTTACATCATGCCCAGGACTTCCTACTGATGCTAAAGCTTTGGTTATCA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate