Basic Information
VIS ID
TVIS42000490
Fusion event
EBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
92242
Orient
+
Integrated sequence
GGGAAGCACGCCGCTCACGTAGCTCCTCTGTCCGGCGTGGCTGGAGTAGGAGGCCCGGGGCAGTGTCTTAATCAGAGCCCTGACATCCTTAACATCGTCC| |GTCAGATGGCCTGTCTTGGACGAGACCATAGTCTGGAACATCTCCTCGAGGACGGGATAGGTGAACACCCACTTGCAAAAGGCCTTGAACTTGGAGCTTA
Host Sequence
Chromosome
chr13
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
65422399/64848267 (Hg38)
End
65422399/64848267 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/3648387; hsa-mir-1267/Downstream/1118063;
Nearest TSS
ENST00000623511/Upstream/772256; ENST00000437777/Downstream/1017907;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1003721, chr13-CpG: 92/Downstream/2382109
Upstream sequence
AAATGTTCTTTTTTTCCGTTTGCTAAACATAGATTCGAGTTTCATATTATAATAACCTGAAAGTAAATCAAAGAGGAAAATTTAAAAAGAGACTAATTAA
Downstream sequence
TTGTGATGCCTTTATATTCCACTGATTTTTTTTTATTAGAGAAGGTTTAAATTGTTCATCTTCACATTTTATCACTTCATTAGGAAAAGCAACCTGTATT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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