Basic Information
VIS ID
TVIS42000493
Fusion event
EBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
155002
Orient
+
Integrated sequence
GTGCCTGGCTACTGTGTCCAGCTTGTAGTCTGAGAGGCTGAGCTTGTCCCGGCACACGGCGTACATGTCGATGGGGATGAGGCCGGTGATGCGGACCTTG| |GTGTTGGCCCGCAAGAAGCCCTTGCCCGCATCATGGGGTCGCCTGACCTCGCAGACGCCCCCAGCCCTAATTTTGCCCAGAGAGGCTGGGTTGATGCTGT
Host Sequence
Chromosome
chr13
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
71988616/71414484 (Hg38)
End
71988616/71414484 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/5196160; hsa-mir-1267/Downstream/6283528;
Nearest TSS
ENST00000623511/Upstream/399343; ENST00000618209/Downstream/452285;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1306397, chr13-CpG: 62/Downstream/450746
Upstream sequence
CTATCAGTGTGTCCTTGGTTGGTGATGTAGGCTCAAGATCACCTAGGCACCCATAACTTTATCTTAATGTGGAGGGAAATTAGACTTACCTTGAAGACAG
Downstream sequence
TTGTCTTGAATTAGGTAGAAAATGTGAAATACAAGACACATAATAATAGTTTAATACATGGGAGTTCTCCTCTCACGCACCCCTCTTACTCACCATTTGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate