Basic Information
VIS ID
TVIS42000495
Fusion event
EBV-RNF219-AS1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
11784
Orient
+
Integrated sequence
GTGTAATGATTAGAAAGTCATAAACCCACTTCCCTTTACATGAATCTGGGCACTGAATTTTGGGGTACTTCTAAAGACTAACGTGTTCGATTTCGGGGTC| |ACTTCCCCTTTTATAAGTGTGTGAACAGTGATTTCAGTAAAACCTAAGAGATATTTGGTGTCACTTCCGCATTTTAAGTTTCAGAAAATTTTAAAATTAA
Host Sequence
Chromosome
chr13
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
78881532/78307397 (Hg38)
End
78881532/78307397 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA13E
Target gene
RNF219-AS1
Nearest miRNA
hsa-mir-1297/Upstream/609281; hsa-mir-1267/Downstream/9311268;
Nearest TSS
ENST00000623511/Upstream/29883; ENST00000607269/Downstream/271079;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/388150, chr13-CpG: 91/Downstream/288582
Upstream sequence
ttccagtctgggcaacaagagcaaaactccgcctcaaaaaaaaaaaCAATAGAAATATGCATTCTCTGTGTTTTGGAGTTTGTTAAAGAGATTTCCATAT
Downstream sequence
TTTGTAACAGTGCCCCCCTTCTCCTGCCCCTGTTATGATAAATTGGCTAGTCTCTGTGAAGGCTGGTGAGGTTTCCACGAACTAGAATGGTATGACTTCC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate