Basic Information
VIS ID
TVIS42000496
Fusion event
EBV-LINC00331 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
111014
Orient
+
Integrated sequence
AGTCCACCAGGGCCTTGTCCTGCCCATCCTCGGCCGTGGCCTTCCCAATCTGAATCATGTCACACACCATGAGCTCGTGATACAGCTCCGTCACAGAGTC| |ATAGAGTTTGACCGTGGCATTATCTGCATGTGCATACACGGCCCCGTAGCTCCCCCGCCCCAGCAGATACTCGCAGGTAATGGGGAGGTGATCACAGCGC
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
79376044/78801909 (Hg38)
End
79376044/78801909 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA13E
Target gene
LINC00331
Nearest miRNA
hsa-mir-1297/Upstream/1103793; hsa-mir-1267/Downstream/8816756;
Nearest TSS
ENST00000623511/Upstream/9602; ENST00000607864/Downstream/539303;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/142627, chr13-CpG: 65/Downstream/603960
Upstream sequence
CTTACATTAAATGACCACCTTACTAAAGGAGCAAAGGCTCACTTCTGACATTATTTATGAACAGCATACGCTGTGCAAAAATACGGAAGGAATTGCCAGG
Downstream sequence
GAATACCTATTAGTTCTGGTAGAAGAATCTACTTTTTATCATTGTTTTCTAAACTTATTTTCAAATTTGTGGCCAGAATGTTGACGCCTCACTGGGGACT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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