Basic Information
VIS ID
TVIS42000497
Fusion event
EBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
97300
Orient
+
Integrated sequence
AAGACCTCCCTTTACAACCTAAGGCGAGGAACTGCCCTTGCTATTCCACAATGTCGTCTTACACCATTGAGTCGTCTCCCCTTTGGAATGGCCCCTGGAC| |CCGGCCCACAACCTGGCCCGCTAAGGGAGTCCATTGTCTGTTATTTCATGGTCTTTTTACAAACTCATATATTTGCTGAGGTTTTGAAGGATGCGATTAA
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
84001906/83427771 (Hg38)
End
84001906/83427771 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1297/Upstream/5729655; hsa-mir-1267/Downstream/4190894;
Nearest TSS
ENST00000623511/Upstream/2177333; ENST00000446314/Downstream/454622;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2772461, chr13-CpG: 18/Downstream/451758
Upstream sequence
tggacagataaattgtatgcatttattgtgtacaacatgatgttttgaaggatatatacattgtaaaataattgaatctcactaattaaaatatgtatta
Downstream sequence
cctaacatagttaccatttttatggtgtactatctactatatagtaatatactattttagcaaatttcaacaatacaatacattgttattaactataata
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate