Basic Information
VIS ID
TVIS42000498
Fusion event
EBV-FARP1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
1526
Orient
+
Integrated sequence
TGACGGTGATGTCTAACACGCTTTTGTCTGCCTGGATTCTTACAGCAGGATTCCTGATTTTCCTCATTGGTAAGTGTGACACCAACAGGTGTTGCCTTGT| |TATGTCACCGTTCTGACACATGACTTACATGGGTTTGGCTTTTGTAGGCTTTGCCCTCTTTGGGGTCATTAGATGCTGCCGCTACTGCTGCTACTACTGC
Host Sequence
Chromosome
chr13
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
99071110/98418856 (Hg38)
End
99071110/98418856 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA13D
Target gene
FARP1
miRNAs that regulate target gene
hsa-let-7b-5p ; hsa-mir-204-5p ; hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-let-7f-5p
Nearest miRNA
hsa-mir-1297/Upstream/210256; hsa-mir-1267/Downstream/937275;
Nearest TSS
ENST00000623511/Upstream/14785; ENST00000597777/Downstream/12187;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/241725, chr13-CpG: 22/Downstream/55929
Upstream sequence
atagtttgaagtgggtttgttcaaacttatagtttgaagtatgatgtgtccagctttgtggttgttttgttttttgtttttttttttttttccctttgga
Downstream sequence
ttgttttgggtattcaggctctttttaggtttcttacgaatgttaggattgttttttctaattctgtgaagaataaagttggtagtttgctagaaatagc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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