Basic Information
VIS ID
TVIS42000500
Fusion event
EBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
95215
Orient
+
Integrated sequence
GCCCCATCGTTTCCCTGACGGCCTCAGGGGCCAAGCAAAACCGCGGGGGCATGGGATCCTTGCACTTAGCCAAGCCTGAGGAAACCTCCCCCGCCGTCTC| |CCCAGTATGCCCCATCGCTTCCCCAGCGGCCTCCAGGTCCAAGCAGCACTGCGGGGTCACTGGATCCTCACAGGCCGCACCCAGCTTTTCTTCCGTTGCC
Host Sequence
Chromosome
chr13
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
108673449/108021101 (Hg38)
End
108673449/108021101 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1267/Upstream/489853; hsa-mir-4502/Downstream/2319857;
Nearest TSS
ENST00000623511/Upstream/150718; ENST00000375898/Downstream/193681;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/152386, chr13-CpG: 19/Downstream/193658
Upstream sequence
tggttaggaaaaatcaatataattaaaatggctatattgcccaaggcaatttacaaattcaacactgttcccatgaaactaccaatgtcattctgcacag
Downstream sequence
aactagaaagaactatttaaaattcatatggaacccgaaaagtgactgaatagccaaggtaatcctaagcaaaaagaacaaagctggaggcatcatgtta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate