Basic Information
VIS ID
TVIS42000501
Fusion event
EBV-TRA integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
51763
Orient
+
Integrated sequence
CCGGCAGATTGTGCCGATAGGTGAAACACTTCCAGATGATGTTTTTTCTGTTGGCCAGGATGGCCACGGTGGGGGGCCTGGCCTCCTTAGGTTTGGCGGC| |CCTGGCCTCGGTGAGAAGCTCGCGTAGCCACACGGCCTGGCGTGCAAAGATGGACATCTCTGGCTCGAAAGACTCGGAGTAGCCGTCCAGGTCCTGCAGA
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
22497137/22028898 (Hg38)
End
22497137/22028898 (Hg38)
Orient
+
Location type
Intronic
Target gene
TRA
Nearest miRNA
hsa-mir-6717/Upstream/1005512; hsa-mir-1185-1/Downstream/928052;
Nearest TSS
ENST00000550708/Upstream/21386; ENST00000390448/Downstream/11696;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/517341, chr14-CpG: 40/Downstream/560117
Upstream sequence
ggacttagaggtgcgtgccaccacaccctgctgatttttgtatCCGGttacttttaaaatcacctaagaaggaaggaggcaaaatatgtatttacagtat
Downstream sequence
actgcctaggacagccttgactaggggaaaaattaggtttaggtgtgtgggtcaggtaaaatggaatggatctttaaaacttcatgttgagcaatagaaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate