Basic Information
VIS ID
TVIS42000502
Fusion event
EBV-chr14 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
90584
Orient
+
Integrated sequence
ACTGCTGCTGCTGTTTGAACAGTAGAATTGTCTCCAGGTTGAGGTGCTTCTCCCCCGGCTTGGTTAGTCTGTTGATTCTGGGTTATGTCGGAGACTGGGA| |ACAGCTGAGGTGCTGCATAAGCTTGATAAGCATTCTCAGGAGCAGGCTGAGGGGCAGAAAACCACGACCCAGTCGGAGCGGTTGAAACATGATAGGCAGT
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
30528717/30059511 (Hg38)
End
30528717/30059511 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/2426233; hsa-mir-1185-1/Downstream/955135;
Nearest TSS
ENST00000550708/Upstream/79257; ENST00000555429/Downstream/132387;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/131297, chr14-CpG: 59/Downstream/499416
Nearby gene
RPS6P24(-3523) ;
Upstream sequence
ggattacaggtttgagccacctcacgtggccaatttgttatgtcttcttaatttggacttgaagtctctctcctgagaatgaccataagccaagataacc
Downstream sequence
aaaagtcatgttgacactgggctgcttcattcttcaattcttaattctgattcctttctcagtttttatgtatttcttttaaaggtaactttttttcagg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate