Basic Information
VIS ID
TVIS42000506
Fusion event
EBV-chr14 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
107062
Orient
+
Integrated sequence
AACCTGGGGTACCCCTGCTACTTTAACGCACTGGTTGATTACGGGGCACTTAACCTGACCAATTACAACCTGGCCCACCACCTGACCCCCACGCTCTATC| |TGGAGCCGCCGGAGATGTTTGTCTACATCACACTGGTCTTTATCGCGGACTGCGTGGCTTTCATCTACTACGCCTGCGGCGAGGTGGCGCTAATCAAGGC
Host Sequence
Chromosome
chr14
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
45763416/45294213 (Hg38)
End
45763416/45294213 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/8341822; hsa-mir-1185-1/Downstream/2466782;
Nearest TSS
ENST00000550708/Upstream/40673; ENST00000566976/Downstream/75002;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/40614, chr14-CpG: 30/Downstream/1357452
Nearby gene
DNAJC19P9(-3732) ;
Upstream sequence
TTCTCTGGGAAGCTGGAAACAAAGGCATGTCCTTTAAGACTCCATATGGGGAAAACACATCCTCCTTTGGAATTTAACCTTAATTTGAACCAAGATCTGT
Downstream sequence
gacaaaaacaagcaatgtggaaaagattccctattcaataaatggtgctaggataactggctagccatatgtagaagattgaaactggaccccttcctta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate