Basic Information
VIS ID
TVIS42000507
Fusion event
EBV-chr14 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
197
Orient
+
Integrated sequence
CTCTTTTGGCTGGCGGCTATTGCCGCCTCGTGTTTCACGGCCTCAGTTAGTACCGTTGTGACCGCCACCGGCTTGGCCCTCTCACTTCTACTCTTGGCAG| |CAGTGGCCAGCTCATATGCCGCTGCACAAAGGAAACTGCTGACACCGGTGACAGTGCTTACTGCGGTTGTCACTTGTGAGTACACACGCACCATTTACAA
Host Sequence
Chromosome
chr14
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
46455112/45985909 (Hg38)
End
46455112/45985909 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/9033518; hsa-mir-1185-1/Downstream/1775086;
Nearest TSS
ENST00000550708/Upstream/44966; ENST00000556071/Downstream/78250;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/732310, chr14-CpG: 30/Downstream/665756
Upstream sequence
acaccactggtacaaaaatagacacatagaccaacggaatagaatacagaacctagaaataaggccatacacctacaactatctgatcttcgacaaacct
Downstream sequence
tgtctcaacatctattttgtctgatgtaagtatagttaatcctgttctctttttatttttacttatgtagaatttttttttcattcttcactttcagtct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate