Basic Information
VIS ID
TVIS42000508
Fusion event
EBV-LOC105378178 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
10749
Orient
+
Integrated sequence
AGGGGCACAAGAATGCCGGCGAAACTGGACCACGGTCCACCCCGCCCTCAAGCGTCCGGGAGCCGGGCGGCTCGGCTAAGGAGGGCGGCCTTGCGAACAA| |TTATTAGTAGCTACCAACAAGGGCCCCCAGATGCCCCCCACCAGTCACCCGGCCGTGTCCACTCACATATTCCACTCTTATTTTTAAATTAATGTGTCCC
Host Sequence
Chromosome
chr14
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
49109184/48639981 (Hg38)
End
49109184/48639981 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378178
Nearest miRNA
hsa-mir-208a/Upstream/878877; hsa-mir-1185-1/Downstream/1326418;
Nearest TSS
ENST00000550708/Upstream/148214; ENST00000557531/Downstream/437524;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/963595, chr14-CpG: 30/Downstream/945951
Upstream sequence
ctgatattgggtacatatatatttataactattatatcgtctggatgagttgtcttctattagcgatatataataaccttctttgacactgtttattttt
Downstream sequence
gtttccagatacaagattaatgtacacaaatcagtagctcttttatacacaaataacaaccaactggagaatcaaatcaagaactcaaccccttttacaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate