Basic Information
VIS ID
TVIS42000509
Fusion event
EBV-chr14 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
73243
Orient
+
Integrated sequence
AGAGCTGCTCGCTCAGGCTGTTCTGTGAATAGTACACTGGGGTGTAGGAGAGGGCCCTGGTGAGACACGTGTCTGGGAGGCGGCAGTTGGTCGGGGTGGA| |GACGACCTCCGCCAGGTGGGATGAGAAGGGGTCAGCGGCTGTCATTACAAAGTAGTGCCTGTCTGCAAAATGGCAGAGGAAGACCGGTAGCCGCTGCACC
Host Sequence
Chromosome
chr14
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
50868760/50402042 (Hg38)
End
50868760/50402042 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/102096; hsa-mir-1185-1/Downstream/3546385;
Nearest TSS
ENST00000550708/Upstream/4638; ENST00000555257/Downstream/14419;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/4878, chr14-CpG: 109/Downstream/129817
Nearby gene
CDKL1(-4638) ;
Upstream sequence
gtcaaactgtcactgtttgatgacaatatgatcgtttaccttgaaaaccctaaagactcctccagaaagttcctagaactgataaaaagaattcagcaaa
Downstream sequence
tacaaaattagctaggcatggtggtgcatgcctgtagtcccagctacgcgggaggctgagggaggagaatcactgcaacccaggtggcagaggttgcagt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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